Hello Ayan, thank you again for your time and recommendations. The log-chart sample you provided along with the pointers you provided proved helpful and I was able to use the log-chart for the needs. The charts work flawlessly for the most part but have been running into issues where the y-axis values are very small or 0 (log of 0 will sure throw an error). Hence 0 (zero) values are being eliminated from the JSON, but very minute values on y-axis (in log-scale) is proving tricky to display. Please refer to the code below and attached graphic --  gages on top gives users an option to change inputs for the chart below. Graphic has the two scenarios -- the left is where it works great and chart on right which has an issue to display y-axis values. Also the attached text file has JSON values for both the scenarios. 
  
Could you please take a look and suggest a work around to display the results properly. Thanks again, RV. 
  
            var percentileChart = new FusionCharts({
                type: 'logmsline',
                width: '600',
                height: '400',
                dataFormat: 'json',
                dataSource: {
                    "chart": {
                        "caption": logchartCaption,
                        "subCaption": "",
                        "xAxisName": "Percentile (%)",
                        "yAxisName": "PEC (µg/l)",
                        "paletteColors": "#e44a00",
                        "captionFontSize": "16",
                        "baseFontColor": "#333333",
                        "baseFont": "Trebuchet MS",
                        "baseFontSize": "12",
                        "bgAlpha": "0",
                        "canvasBorderAlpha": "0",
                        "LegendShadow": "0",
                        "legendBorderAlpha": "0",
                        "showXAxisLine": "1",
                        "showValues": "0",
                        "showBorder": "0",
                        "decimals": "5",
                        "labelDisplay": "none",
                        "base": "10",
                        "axisLineAlpha": "10",
                        "divLineAlpha": "10",
                        "yAxisValueDecimals": "5",
"yAxisMinValue": "0",
"showLegend": "0"
                    },
                    "categories": [
                        {
                            "category": [
                                { "label": "0", "showverticalline": "1" },
                                { "label": "1", "showlabel": "0", "showverticalline": "0" },
                                { "label": "2", "showlabel": "0", "showverticalline": "0" },
                                { "label": "3", "showlabel": "0", "showverticalline": "0" },
                                { "label": "4", "showlabel": "0", "showverticalline": "0" },
                                { "label": "5", "showlabel": "0", "showverticalline": "0" },
                                { "label": "6", "showlabel": "0", "showverticalline": "0" },
                                { "label": "7", "showlabel": "0", "showverticalline": "0" },
                                { "label": "8", "showlabel": "0", "showverticalline": "0" },
                                { "label": "9", "showlabel": "0", "showverticalline": "0" },
                                { "label": "10", "showlabel": "0", "showverticalline": "0" },
                                { "label": "11", "showlabel": "0", "showverticalline": "0" },
                                { "label": "12", "showlabel": "0", "showverticalline": "0" },
                                { "label": "13", "showlabel": "0", "showverticalline": "0" },
                                { "label": "14", "showlabel": "0", "showverticalline": "0" },
                                { "label": "15", "showlabel": "0", "showverticalline": "0" },
                                { "label": "16", "showlabel": "0", "showverticalline": "0" },
                                { "label": "17", "showlabel": "0", "showverticalline": "0" },
                                { "label": "18", "showlabel": "0", "showverticalline": "0" },
                                { "label": "19", "showlabel": "0", "showverticalline": "0" },
                                { "label": "20", "showlabel": "1", "showverticalline": "1" },
                                { "label": "21", "showlabel": "0", "showverticalline": "0" },
                                { "label": "22", "showlabel": "0", "showverticalline": "0" },
                                { "label": "23", "showlabel": "0", "showverticalline": "0" },
                                { "label": "24", "showlabel": "0", "showverticalline": "0" },
                                { "label": "25", "showlabel": "0", "showverticalline": "0" },
                                { "label": "26", "showlabel": "0", "showverticalline": "0" },
                                { "label": "27", "showlabel": "0", "showverticalline": "0" },
                                { "label": "28", "showlabel": "0", "showverticalline": "0" },
                                { "label": "29", "showlabel": "0", "showverticalline": "0" },
                                { "label": "30", "showlabel": "0", "showverticalline": "0" },
                                { "label": "31", "showlabel": "0", "showverticalline": "0" },
                                { "label": "32", "showlabel": "0", "showverticalline": "0" },
                                { "label": "33", "showlabel": "0", "showverticalline": "0" },
                                { "label": "34", "showlabel": "0", "showverticalline": "0" },
                                { "label": "35", "showlabel": "0", "showverticalline": "0" },
                                { "label": "36", "showlabel": "0", "showverticalline": "0" },
                                { "label": "37", "showlabel": "0", "showverticalline": "0" },
                                { "label": "38", "showlabel": "0", "showverticalline": "0" },
                                { "label": "39", "showlabel": "0", "showverticalline": "0" },
                                { "label": "40", "showlabel": "1", "showverticalline": "1" },
                                { "label": "41", "showlabel": "0", "showverticalline": "0" },
                                { "label": "42", "showlabel": "0", "showverticalline": "0" },
                                { "label": "43", "showlabel": "0", "showverticalline": "0" },
                                { "label": "44", "showlabel": "0", "showverticalline": "0" },
                                { "label": "45", "showlabel": "0", "showverticalline": "0" },
                                { "label": "46", "showlabel": "0", "showverticalline": "0" },
                                { "label": "47", "showlabel": "0", "showverticalline": "0" },
                                { "label": "48", "showlabel": "0", "showverticalline": "0" },
                                { "label": "49", "showlabel": "0", "showverticalline": "0" },
                                { "label": "50", "showlabel": "0", "showverticalline": "0" },
                                { "label": "51", "showlabel": "0", "showverticalline": "0" },
                                { "label": "52", "showlabel": "0", "showverticalline": "0" },
                                { "label": "53", "showlabel": "0", "showverticalline": "0" },
                                { "label": "54", "showlabel": "0", "showverticalline": "0" },
                                { "label": "55", "showlabel": "0", "showverticalline": "0" },
                                { "label": "56", "showlabel": "0", "showverticalline": "0" },
                                { "label": "57", "showlabel": "0", "showverticalline": "0" },
                                { "label": "58", "showlabel": "0", "showverticalline": "0" },
                                { "label": "59", "showlabel": "0", "showverticalline": "0" },
                                { "label": "60", "showlabel": "1", "showverticalline": "1" },
                                { "label": "61", "showlabel": "0", "showverticalline": "0" },
                                { "label": "62", "showlabel": "0", "showverticalline": "0" },
                                { "label": "63", "showlabel": "0", "showverticalline": "0" },
                                { "label": "64", "showlabel": "0", "showverticalline": "0" },
                                { "label": "65", "showlabel": "0", "showverticalline": "0" },
                                { "label": "66", "showlabel": "0", "showverticalline": "0" },
                                { "label": "67", "showlabel": "0", "showverticalline": "0" },
                                { "label": "68", "showlabel": "0", "showverticalline": "0" },
                                { "label": "69", "showlabel": "0", "showverticalline": "0" },
                                { "label": "70", "showlabel": "0", "showverticalline": "0" },
                                { "label": "71", "showlabel": "0", "showverticalline": "0" },
                                { "label": "72", "showlabel": "0", "showverticalline": "0" },
                                { "label": "73", "showlabel": "0", "showverticalline": "0" },
                                { "label": "74", "showlabel": "0", "showverticalline": "0" },
                                { "label": "75", "showlabel": "0", "showverticalline": "0" },
                                { "label": "76", "showlabel": "0", "showverticalline": "0" },
                                { "label": "77", "showlabel": "0", "showverticalline": "0" },
                                { "label": "78", "showlabel": "0", "showverticalline": "0" },
                                { "label": "79", "showlabel": "0", "showverticalline": "0" },
                                { "label": "80", "showlabel": "1", "showverticalline": "1" },
                                { "label": "81", "showlabel": "0", "showverticalline": "0" },
                                { "label": "82", "showlabel": "0", "showverticalline": "0" },
                                { "label": "83", "showlabel": "0", "showverticalline": "0" },
                                { "label": "84", "showlabel": "0", "showverticalline": "0" },
                                { "label": "85", "showlabel": "0", "showverticalline": "0" },
                                { "label": "86", "showlabel": "0", "showverticalline": "0" },
                                { "label": "87", "showlabel": "0", "showverticalline": "0" },
                                { "label": "88", "showlabel": "0", "showverticalline": "0" },
                                { "label": "89", "showlabel": "0", "showverticalline": "0" },
                                { "label": "90", "showlabel": "0", "showverticalline": "0" },
                                { "label": "91", "showlabel": "0", "showverticalline": "0" },
                                { "label": "92", "showlabel": "0", "showverticalline": "0" },
                                { "label": "93", "showlabel": "0", "showverticalline": "0" },
                                { "label": "94", "showlabel": "0", "showverticalline": "0" },
                                { "label": "95", "showlabel": "0", "showverticalline": "0" },
                                { "label": "96", "showlabel": "0", "showverticalline": "0" },
                                { "label": "97", "showlabel": "0", "showverticalline": "0" },
                                { "label": "98", "showlabel": "0", "showverticalline": "0" },
                                { "label": "99", "showlabel": "0", "showverticalline": "0" },
                                { "label": "100", "showlabel": "1", "showverticalline": "1" }
                            ]
                        }
                    ],
"annotations": {
                        "groups": [
                            {
                                "id": "anchor-highlight",
                                "items": [
                                    {
                                        "id": "high-star",
                                        "type": "circle",
                                        "x": "$dataset.0.set.50.x",
                                        "y": "$dataset.0.set.50.y",
                                        "radius": "12",
                                        "color": "#6baa01",
                                        "border": "2",
                                        "borderColor": "#f8bd19"
                                    },
                                    {
                                        "id": "label",
                                        "type": "text",
                                        "text": "50th Percentile",
                                        "fillcolor": "#6baa01",
                                        "rotate": "90",
                                        "x": "$dataset.0.set.50.x+40",
                                        "y": "$dataset.0.set.50.y+20"
                                    },
                                    {
                                        "id": "high-star",
                                        "type": "circle",
                                        "x": "$dataset.0.set.95.x",
                                        "y": "$dataset.0.set.95.y",
                                        "radius": "12",
                                        "color": "#6baa01",
                                        "border": "2",
                                        "borderColor": "#f8bd19"
                                    },
                                    {
                                        "id": "label",
                                        "type": "text",
                                        "text": "95th Percentile",
                                        "fillcolor": "#6baa01",
                                        "rotate": "90",
                                        "x": "$dataset.0.set.95.x-55",
                                        "y": "$dataset.0.set.95.y-10"
                                    }
                                ]
                            }
                        ]
                    },
"dataset": [
                        {
                            "seriesname": "PEC",
                            'data': jsonData
                        }
                    ]
                }
            });
   percentileChart.render("scatterplotContainer");
 
JSON data log-chart scenarios.txt